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Arabidopsis response to nitrogen availability
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Keywords :Nitrate/nitrite transporters, N starvation, QTL, NRT2 family, NIN-Like-Proteins, PII protein, Arabidopsis

Doctoral school affiliation : ED435 ABIES

 


Contacts :

Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
Bâtiment 2
INRA Centre de Versailles-Grignon
Route de St-Cyr (RD10)
78026 Versailles Cedex France

tél : +33 (0)1 30 83 30 00 - fax : +33 (0)1 30 83 33 19

Françoise

Group leader
Françoise Daniel-Vedele
Senior scientist

Sylvain

Sylvain Chaillou
Professor AgroParisTech

Fabien

Fabien Chardon
Research Scientist

Magali

Magali Bedu
Technician

Giorgiana Chietera
PhD Student
from 01/09/11 to 31/08/14

Laure David
PhD Student
from 1/10/11 to 30/09/14

 

 

Anne

Associate Group leader
Anne Krapp
Senior scientist

Sylvie
Sylvie Ferrario-Méry
Research Scientist

Virginie

Virginie Bréhaut
Technician

Patrick Berquin
Technician

Chloé Marchive
Post-Doc 50%
from 02/11/09 to 31/10/11


Cécile Larchevêque
Licence Pro
from 12/09/11 to 14/09/12

 

 


Summary :

 

 

The final aim of our studies is to generate new plant genotypes, showing a better nitrogen use efficiency that allows constant yield (biomass production and seed quality) even under low nitrogen supply. We focused our research on three aspects:

 

 

Transport of nitrate/nitrite within the whole plant

Nitrate is both the major source of nitrogen, at least for our temperate culture conditions, and the first stored nitrogen compound used to sustain growth under external constraints. We study the molecular mechanisms that govern soil nitrate uptake by plant roots and its transport, storage and mobilisation within the whole plant during development. We particularly focus our studies on the high affinity nitrate transport system, which involves the NRT2 protein family. The translocation of the first product of its assimilation, nitrite, into the chloroplast is still not completely elucidated in higher plants and one of our target genes, encoding the chloroplastic PII protein (see below), seems to be involved in this step

.Hydroponie
Hydroponics

Signaling of nitrogen starvation

The plant response to nitrogen availability requires mechanisms of sensing and regulation that control and coordinate the transport and the assimilation of nitrogen at both cellular and whole plant level. Two candidate genes are studied using functional genomic approaches. The PII signal transducing protein is a highly conserved protein involved in the amino acid/sugar-starch ratio (C/N) in response to nitrogen deprivation in plants. The AtNLP genes contain a putative RWPRK DNA-binding domain. This domain is found in proteins which have been proposed to act as transcription factors and to be involved in nitrogen-controlled developmental processes. We propose that NLP7 is involved in the regulation of N perception.

Exploring natural variation for plant adaptation to nitrogen availability (more details)

Plants present a fantastic plasticity of their development in response to different environmental constraints. By using our favourite model plant, Arabidopsis thaliana, we investigate the genetic components of the adaptation of plants to nitrogen limited supply. Among several accessions, Arabidopsis plants present different patterns of development and N utilization. We would like to characterize these responses under nitrogen limited supply. For this achievement, we first measure growth rate and N metabolism of Arabidopsis plants under different nitrogen supplies. Then we identify loci associated to response variation by QTL analysis. Our work leads to the identification of genes involved in growth and nitrogen metabolism and offers bases for selection of plants which will have a better N use efficiency.


Main Results :

 


Selected Publications :


Castaings L, Camargo A, Pocholle, D, Gaudon V, Texier Y, et coll (2008). The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis.The Plant Journal, 57 : 426-435

 

Mérigout P, Lelandais,M, Bitton F, Renou J, Briand X et coll. (2008). Physiological and transcriptomic aspects of urea uptake and assimilation in Arabidopsis plants. Plant Physiology, 147 : 1225-1238.  

Wirth J, Chopin F, Santoni V, Viennois, G, Tillard P et coll (2007). Regulation of root nitrate uptake at the NRT2.1 protein level in Arabidopsis thaliana. J Biol Chem, 282 : 23541-23552.

Loudet O, Colombani V, Camilleri C, Calenge F, Gaudon V, Kopriva A, North K A, Daniel-Vedele F (2007). Natural variation for sulfate content in Arabidopsis is highly controlled by adenosine 5'-phosphosulfate reductase. Nature Genetics, 39 : 896-900.

Chopin F, Orsel M, Dorbe MF, Chardon F, Truong HN, Miller T, Krapp A, Daniel-Vedele F (2007). The arabidopsis ATNRT2.7 nitrate transporter gene controls nitrate content in seeds. The Plant Cell, 19 : 1590-602.

Orsel M, Chopin F, Leleu O, Smith S J, Krapp A, Daniel-Vedele F, Miller (2006). Characterization of a two component high-affinity nitrate uptake system in Arabidopsis. Physiology and protein-protein interactions. Plant Physiol, 42 : 1304-1317

Calenge F, Saliba-Colombani V, Mahieu S, Loudet O, Daniel-Vedele F, Krapp A (2006).  Natural variation for carbohydrate content in Arabidopsis thaliana : interaction with complex traits dissected by quantitative genetics. Plant Physiol, 141 : 1630-1643

Ferrario-Mery S, Bouvet M, Leleu O, Savino G, Hodges C, Meyer C (2005). Physiological characterization of Arabidopsis mutants affected in the expression of the putative regulatory protein pII. Planta, 223 : 28-39.

Loudet O , Chaillou, S, Merigout, P, Talbotec J, and Daniel-Vedele F (2003). Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiol, 131 : 345-358.

 

 


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